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EVA sec results for: PSIpred month: 2002_06

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2002_06 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2002_06 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2002_06	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_06	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_06	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2002_06	dssp	THIS_month:psum	73.2	69	68	40	44	72	69	67.0	74.3	73.1	63.6	3.2	0.34	0.34	0.33	0.62	0.67	0.51	95.6	5.9	5.6

sec	2002_06	dssp	1gr8:A	83.0	85	89	60	91	89	75	73.2	87	72	59	0.7	0.49	0.48	0.51	0.79	0.70	0.68	100.0	1.0	5.0
sec	2002_06	dssp	1gty:A	82.5	0	0	70	93	94	75	83.0	100	79	86	0.0	0.38	0.37	0.39	1.0	0.67	0.67	0.0	0.00	12.0
sec	2002_06	dssp	1gw5:B	76.2	91	76	0	0	48	79	71.5	82	100	53	0.6	0.18	0.17	0.20	0.46	1.0	0.47	100.0	13.0	0.00
sec	2002_06	dssp	1gw5:S	94.4	100	95	89	91	90	94	93.5	91	92	97	1.4	0.79	0.79	0.79	0.95	0.87	0.89	100.0	2.0	0.00
sec	2002_06	dssp	1jy4:A	62.9	0	0	70	80	45	50	53.3	100	54	50	5.7	0.07	0.09	0.06	1.0	0.32	0.25	100.0	11.0	8.0
sec	2002_06	dssp	1k8v:A	76.9	94	72	0	0	63	93	63.2	100	100	47	0.0	0.34	0.38	0.31	0.66	1.0	0.58	100.0	12.0	5.0
sec	2002_06	dssp	1kmd:A	72.7	90	65	68	64	61	85	65.5	73	72	60	2.5	0.32	0.32	0.32	0.61	0.61	0.52	100.0	13.0	0.00
sec	2002_06	dssp	1kw4:A	85.7	86	90	0	0	83	76	85.7	92	100	73	0.0	0.38	0.39	0.38	0.69	1.0	0.69	100.0	2.0	0.00
sec	2002_06	dssp	1l1o:C	85.0	91	93	79	89	85	75	88.1	100	84	81	0.0	0.58	0.59	0.59	0.89	0.76	0.68	100.0	0.00	4.0
sec	2002_06	dssp	1l2p:A	91.8	91	100	0	0	100	37	45.5	44	100	83	0.0	0.41	0.56	0.28	0.58	1.0	0.58	100.0	8.0	0.00
sec	2002_06	dssp	1l2r:A	59.3	59	67	28	27	70	62	55.0	61	33	54	12.2	0.11	0.11	0.11	0.36	0.15	0.42	100.0	5.0	0.00
sec	2002_06	dssp	1l2w:I	54.4	94	44	0	0	51	71	47.4	65	0	54	10.5	0.13	0.10	0.16	0.41	1.0	0.31	100.0	33.0	19.0
sec	2002_06	dssp	1l3a:C	72.0	81	79	62	79	77	63	70.4	64	81	63	2.1	0.34	0.34	0.34	0.75	0.53	0.48	100.0	0.00	8.0
sec	2002_06	dssp	1l6p:A	64.5	42	50	56	85	82	50	53.1	57	51	57	2.4	0.21	0.21	0.21	0.43	0.41	0.39	100.0	0.00	20.0
sec	2002_06	dssp	1l8r:A	75.2	86	86	70	70	64	64	69.4	93	51	54	0.9	0.39	0.40	0.40	0.75	0.61	0.46	100.0	0.00	0.00
sec	2002_06	dssp	1l8y:A	83.1	82	92	0	0	84	78	70.9	68	100	79	4.8	0.39	0.45	0.34	0.63	1.0	0.72	100.0	7.0	4.0
sec	2002_06	dssp	1l9v:A	75.1	79	84	72	58	71	74	70.4	79	76	61	2.2	0.33	0.34	0.33	0.69	0.58	0.53	100.0	2.0	3.0
sec	2002_06	dssp	1lf7:A	81.0	50	80	93	82	84	80	81.6	50	100	80	2.3	0.55	0.53	0.57	0.57	0.80	0.66	100.0	7.0	4.0
sec	2002_06	dssp	1ln1:A	77.8	89	80	69	90	80	66	81.4	85	85	74	1.4	0.44	0.45	0.44	0.79	0.67	0.56	100.0	2.0	9.0
sec	2002_06	dssp	1lq7:A	97.0	98	98	0	0	93	93	99.3	100	100	96	0.0	0.76	0.76	0.76	0.91	1.0	0.91	100.0	0.00	0.00
sec	2002_06	dssp	1ls7:A	61.6	59	73	0	0	64	50	55.1	64	100	39	0.0	0.04	0.04	0.04	0.23	1.0	0.23	100.0	11.0	0.00
sec	2002_06	dssp	1lub:A	38.0	44	53	33	10	34	56	37.0	56	30	24	14.0	0.08	0.09	0.07	0.23	-0.03	0.05	100.0	6.0	26.0
sec	2002_06	dssp	1luo:A	35.2	0	0	23	20	50	52	29.2	0	22	39	10.9	0.03	0.03	0.03	-0.16	-0.12	-0.09	100.0	1.0	4.0

sec	2002_06	dssp	THIS_month:psum	73.2	69	68	40	44	72	69	67.0	74.3	73.1	63.6	3.2	0.34	0.34	0.33	0.62	0.67	0.51	95.6	5.9	5.6

sec	2002_06	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_06	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_06	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2002_06
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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