EVA results for 1l1o:C

DATE : 2002_06_05
TYPE : sec
NRES : 173
HEADER : DNA BINDING PROTEIN
COMPND : 2 MOLECULE: REPLICATION PROTEIN A 14 KDA SUBUNIT;
SOURCE : 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
AUTHOR : E.V.BOCHKAREVA, S.KOROLEV, S.P.LEES-MILLER, A.BOCHKAREV

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17..
seq	NTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYIKATVMDVKPVDYREYGRRLVMSIRRSALM
dssp	---E--HHHHHHH--------EEEEEEEEEEEE-----EEEE--------E-EEE---EEEE----EEE----EEEEEEEEEE----EEEEEEEHHHHHHHH---HHHHHHH----HHHHHHHHHH----EEEEEEEEE-----EEEEEEEEE--HHHHHHHHHHHHHHHHH-
phd	---HHHHHHHHHHH--------EEEEEEEEEEEE-------------HHHHH-------EEE----------EEEEEEEEEE-----EEEEEE-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-----EEEEEEEE--EEEEEEEE------HHHHHHHHHHHHHHH--	+6.9	+9.7	+0.19
phdpsi	---HHHHHHHHHHH--------EEEEEEEEEEEE----EEE--------HHH-------EEE----------EEEEEEEEEEE-----EEEEE---HHHHHHHH-HHHHHH-------HHHHHHHHH---EEEEEEEEEE-E-EEEEEEEEE-----HHHHHHHHHHHHH---	+4.8	+13.9	+0.12
prof_king	-----EEEEEH-----------EEEEEEEEEEEE---EEEE---------EEEE----EEEEE----------EEEEEEEEEE----EEEEEEHHHHHHHHH---HHHHHH-----HHHHHHHHHHH---EEEEEEEEEE---EEEEEEEE-----HHHHHHHHHHHHHH---	+9.1	+16.7	+0.17
profsec	---HHHHHHHHHH---------EEEEEEEEEEEE---EEEEE--------EEEE-----EEE-----------EEEEEEEEEE-----EEEEEEHHHHHHHH---HHHHHHHH-----HHHHHHHHH---EEEEEEEEEEEEEEEEEEEEEEEE-HHHHHHHHHHHHHHHH--	+9.5	+9.9	+0.21
psipred	------HHHHHH----------EEEEEEEEEEEE---EEE----------EEEE----EEEE----------EEEEEEEEEEE----EEEEEEEHHHHHHH----HHHHHHHHH--HHHHHHHHHHH----EEEEEEEEEE----EEEEE-----HHHHHHHHHHHHHHH---	+7	+13.4	+0.17
samt99_sec	---HHHHHHHHHH---------EEEEEEEEEEE-----EE----------EEEE-----EE-----------EEEEEEEEEEE-----EEEEEHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHH--EEEEEEEEEE---	+9.8	+16.9	+0.22
sspro2	---HHHHHHHHHH---------EEEEEEEEEEE-----EE-----H----EEE------EEE----------EEEEEEEEEEE-----EEEEE-HHHHHHHH---HHHHHHHHH--HHHHHHHHHHH----EEEEEEEEEEEEEEEEEEE-----HHHHHHHHHHHHHHHH--	+5.7	+7.3	+0.17

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Jun 5, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva