Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom Explain scores

EVA sec results for: PSIpred month: 2002_08

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2002_08 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2002_08 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2002_08	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_08	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_08	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2002_08	dssp	THIS_month:psum	75.4	69	67	46	55	75	75	72.1	78.7	55.5	71.4	3.9	0.35	0.35	0.34	0.7	0.65	0.54	92.8	9.8	5.4

sec	2002_08	dssp	1htw:A	87.3	98	89	84	86	80	85	94.2	98	95	89	0.0	0.63	0.64	0.63	0.90	0.79	0.73	100.0	3.0	0.00
sec	2002_08	dssp	1iw4:A	47.3	71	17	0	0	55	80	41.8	57	0	50	12.7	0.03	0.04	0.04	0.14	1.0	0.23	100.0	40.0	18.0
sec	2002_08	dssp	1jv1:A	85.7	92	88	0	0	64	75	86.6	92	100	67	0.0	0.30	0.29	0.31	0.60	1.0	0.60	100.0	3.0	0.00
sec	2002_08	dssp	1koz:A	72.2	0	0	33	50	80	92	64.7	100	17	72	5.5	0.12	0.16	0.09	1.0	0.31	0.38	100.0	16.0	5.0
sec	2002_08	dssp	1kr4:A	79.1	100	86	70	86	65	61	71.9	100	55	77	0.9	0.53	0.54	0.53	0.88	0.65	0.49	100.0	5.0	7.0
sec	2002_08	dssp	1ku0:A	71.6	61	87	54	62	86	66	61.7	61	53	64	2.5	0.27	0.27	0.29	0.61	0.50	0.51	100.0	11.0	2.0
sec	2002_08	dssp	1l5p:A	81.7	68	81	82	76	86	85	84.1	68	81	92	4.3	0.42	0.42	0.43	0.68	0.70	0.72	100.0	3.0	2.0
sec	2002_08	dssp	1l7y:A	77.7	57	100	75	70	87	77	72.5	63	82	70	3.1	0.39	0.37	0.41	0.72	0.60	0.62	100.0	8.0	2.0
sec	2002_08	dssp	1l8d:A	85.4	89	97	0	0	84	45	68.1	71	0	52	0.0	0.38	0.39	0.38	0.68	1.0	0.55	100.0	6.0	3.0
sec	2002_08	dssp	1lmz:A	78.1	85	83	0	0	72	80	65.2	66	0	66	2.6	0.29	0.30	0.28	0.64	-0.03	0.60	100.0	1.0	2.0
sec	2002_08	dssp	1luz:A	84.7	85	75	81	96	87	78	83.1	73	86	83	1.1	0.58	0.59	0.58	0.75	0.81	0.71	100.0	2.0	7.0
sec	2002_08	dssp	1lw7:A	78.5	86	80	82	78	67	75	74.9	83	92	60	0.2	0.42	0.42	0.42	0.68	0.77	0.54	100.0	3.0	0.00
sec	2002_08	dssp	1m4i:A	67.4	74	55	48	72	80	75	67.6	70	53	79	16.0	0.25	0.26	0.26	0.47	0.42	0.64	0.0	9.0	11.0
sec	2002_08	dssp	1mb6:A	60.0	0	0	45	100	66	80	74.3	100	63	79	5.7	0.25	0.31	0.20	1.0	0.60	0.28	100.0	28.0	17.0

sec	2002_08	dssp	THIS_month:psum	75.4	69	67	46	55	75	75	72.1	78.7	55.5	71.4	3.9	0.35	0.35	0.34	0.7	0.65	0.54	92.8	9.8	5.4

sec	2002_08	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_08	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_08	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2002_08
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Explain scores - Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top