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EVA sec results for: PSIpred month: 2002_02

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2002_02 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2002_02 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2002_02	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_02	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_02	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2002_02	dssp	THIS_month:psum	70.8	62	60	43	49	71	71	67.2	68.0	71.3	64.5	3.2	0.30	0.29	0.30	0.50	0.60	0.45	82.7	6.6	5.5

sec	2002_02	dssp	1eq1:A	83.7	95	84	0	0	50	81	64.7	65	100	62	0.0	0.26	0.23	0.30	0.54	1.0	0.54	100.0	10.0	0.00
sec	2002_02	dssp	1g9p:A	46.7	0	0	11	20	60	64	13.9	0	2	16	0.0	0.10	0.11	0.10	-0.13	0.00	-0.29	100.0	13.0	8.0
sec	2002_02	dssp	1h67:A	76.9	75	86	0	0	79	68	82.9	85	100	77	2.7	0.24	0.27	0.22	0.53	1.0	0.57	100.0	8.0	2.0
sec	2002_02	dssp	1i2v:A	59.1	57	100	25	33	76	61	39.8	85	23	35	0.0	0.24	0.22	0.27	0.72	0.06	0.13	100.0	6.0	6.0
sec	2002_02	dssp	1igq:D	62.7	0	0	70	81	60	57	75.0	0	85	71	1.6	0.19	0.21	0.19	-0.07	0.53	0.27	100.0	5.0	6.0
sec	2002_02	dssp	1itp:A	64.9	91	75	19	71	85	57	69.1	100	26	82	6.4	0.32	0.30	0.36	0.74	0.25	0.47	100.0	6.0	24.0
sec	2002_02	dssp	1j7x:A	84.4	83	93	83	76	85	81	88.0	89	86	87	0.9	0.53	0.53	0.53	0.82	0.74	0.70	0.0	3.0	1.0
sec	2002_02	dssp	1jdq:A	81.6	100	61	100	84	66	100	58.7	100	100	41	0.0	0.61	0.64	0.59	0.70	0.89	0.68	0.0	14.0	4.0
sec	2002_02	dssp	1jeo:A	89.3	94	92	91	81	79	87	85.7	89	89	78	0.0	0.63	0.63	0.63	0.86	0.84	0.75	100.0	1.0	1.0
sec	2002_02	dssp	1jkz:A	43.5	36	26	31	83	57	44	41.1	24	43	57	8.6	0.08	0.08	0.09	0.04	0.39	0.05	100.0	8.0	21.0
sec	2002_02	dssp	1jmu:B	66.2	75	75	41	41	66	66	51.4	47	44	57	5.6	0.25	0.26	0.26	0.59	0.29	0.42	100.0	0.00	0.00
sec	2002_02	dssp	1jnr:B	77.9	50	55	65	88	88	79	73.2	47	72	79	0.0	0.34	0.32	0.36	0.45	0.70	0.51	100.0	1.0	6.0
sec	2002_02	dssp	1jrm:A	67.3	74	69	63	56	64	71	67.3	90	78	54	2.8	0.26	0.26	0.26	0.59	0.47	0.40	0.0	1.0	2.0
sec	2002_02	dssp	1jsb:A	51.4	75	31	50	40	47	79	57.6	100	43	56	11.4	0.15	0.17	0.14	0.38	0.15	0.32	100.0	15.0	7.0
sec	2002_02	dssp	1jw2:A	88.9	93	90	0	0	79	86	85.4	100	100	64	0.0	0.46	0.45	0.47	0.74	1.0	0.74	100.0	2.0	0.00
sec	2002_02	dssp	1jw3:A	81.4	93	85	82	78	73	81	87.5	100	90	78	0.0	0.51	0.52	0.51	0.86	0.70	0.62	100.0	2.0	2.0
sec	2002_02	dssp	1jy1:A	68.7	63	62	64	80	73	67	62.1	64	69	57	2.6	0.26	0.26	0.26	0.48	0.64	0.42	100.0	0.00	4.0
sec	2002_02	dssp	1jyg:A	76.8	90	76	0	0	52	76	73.8	80	100	61	0.0	0.18	0.17	0.20	0.47	1.0	0.47	100.0	11.0	0.00
sec	2002_02	dssp	1k0s:A	67.5	50	22	63	88	74	73	74.7	56	71	80	6.6	0.24	0.26	0.23	0.23	0.62	0.48	100.0	11.0	11.0
sec	2002_02	dssp	1k1f:A	85.1	91	88	0	0	68	76	92.9	97	100	80	0.0	0.31	0.31	0.32	0.62	1.0	0.62	100.0	2.0	0.00
sec	2002_02	dssp	1k28:D	67.3	50	50	61	74	79	69	61.4	54	63	62	7.8	0.21	0.21	0.22	0.38	0.52	0.50	100.0	0.00	6.0
sec	2002_02	dssp	1k6w:A	80.4	84	86	67	83	83	74	77.5	87	75	70	1.4	0.44	0.44	0.45	0.77	0.68	0.63	0.0	0.00	4.0
sec	2002_02	dssp	1kbh:A	78.7	79	85	0	0	77	70	81.8	86	100	74	0.0	0.24	0.25	0.24	0.56	1.0	0.56	100.0	4.0	0.00
sec	2002_02	dssp	1khc:A	66.7	50	81	66	75	82	58	61.8	55	77	60	1.4	0.26	0.26	0.28	0.48	0.63	0.40	100.0	14.0	2.0
sec	2002_02	dssp	1kps:B	80.8	84	85	0	0	74	84	78.5	92	100	61	4.4	0.33	0.37	0.30	0.60	1.0	0.67	0.0	0.00	5.0
sec	2002_02	dssp	1kq4:C	57.6	0	0	76	62	81	56	66.1	0	100	80	15.1	0.22	0.19	0.26	-0.10	0.45	0.47	100.0	24.0	9.0
sec	2002_02	dssp	1kqi:A	50.0	0	0	0	0	67	73	29.9	100	0	40	7.8	0.05	0.07	0.05	1.0	-0.20	-0.02	100.0	21.0	15.0
sec	2002_02	dssp	1ktz:B	67.9	0	0	58	84	80	74	76.1	0	67	87	7.5	0.21	0.24	0.20	-0.06	0.53	0.50	100.0	10.0	14.0
sec	2002_02	dssp	1kwh:A	80.1	87	88	62	70	77	74	73.3	82	65	66	0.0	0.45	0.45	0.46	0.78	0.60	0.59	100.0	0.00	1.0

sec	2002_02	dssp	THIS_month:psum	70.8	62	60	43	49	71	71	67.2	68.0	71.3	64.5	3.2	0.30	0.29	0.30	0.50	0.60	0.45	82.7	6.6	5.5

sec	2002_02	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_02	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_02	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2002_02
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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