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EVA sec results for: PSIpred month: 2001_01

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2001_01 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2001_01 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2001_01	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_01	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_01	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2001_01	dssp	THIS_month:psum	74.1	72	80	45	48	76	67	66.5	78.1	76.1	65.2	3.2	0.37	0.39	0.36	0.7	0.68	0.49	94.4	10.5	6.1

sec	2001_01	dssp	1dqe:A	78.8	86	84	50	20	66	73	74.8	98	25	49	0.0	0.30	0.31	0.29	0.62	0.30	0.53	100.0	1.0	2.0
sec	2001_01	dssp	1emx:A	33.3	0	0	0	0	35	83	20.4	100	0	21	0.0	0.16	0.26	0.06	1.0	-0.14	-0.32	100.0	36.0	16.0
sec	2001_01	dssp	1ep1:B	78.2	84	79	74	83	78	73	78.6	80	86	72	0.0	0.43	0.44	0.44	0.77	0.68	0.56	100.0	1.0	3.0
sec	2001_01	dssp	1es8:A	78.4	100	100	33	100	100	50	75.9	100	50	63	0.0	0.75	0.71	0.79	1.0	0.50	0.60	100.0	0.00	21.0
sec	2001_01	dssp	1f9a:A	89.6	93	91	91	84	85	89	95.9	99	97	91	0.0	0.64	0.65	0.64	0.86	0.85	0.78	100.0	0.00	1.0
sec	2001_01	dssp	1fc6:A	85.0	91	85	80	85	83	84	86.3	94	82	83	1.5	0.53	0.53	0.53	0.82	0.76	0.72	0.0	2.0	1.0
sec	2001_01	dssp	1fe6:A	48.1	44	100	0	0	100	16	33.6	33	100	31	23.0	0.17	0.29	0.06	0.21	1.0	0.34	100.0	51.0	23.0
sec	2001_01	dssp	1foe:A	82.6	86	88	84	82	74	72	79.5	80	83	76	0.0	0.48	0.48	0.48	0.73	0.81	0.60	100.0	1.0	0.00
sec	2001_01	dssp	1fqt:A	83.5	100	100	81	81	84	84	78.2	100	79	76	0.0	0.44	0.44	0.44	1.0	0.66	0.66	100.0	0.00	0.00
sec	2001_01	dssp	1fy2:A	81.2	83	84	71	74	83	81	83.6	90	79	80	1.2	0.43	0.43	0.44	0.76	0.67	0.65	100.0	0.00	0.00
sec	2001_01	dssp	1fzp:D	57.1	61	77	0	0	47	61	58.0	57	100	58	17.8	0.08	0.11	0.07	0.18	1.0	0.37	100.0	14.0	21.0
sec	2001_01	dssp	1g1i:A	81.4	81	96	0	0	80	36	61.5	59	100	86	0.0	0.20	0.24	0.15	0.45	1.0	0.45	100.0	13.0	0.00
sec	2001_01	dssp	1g2c:A	56.0	56	92	0	0	50	11	42.6	44	100	10	8.0	0.02	0.03	0.01	0.03	1.0	0.08	100.0	36.0	8.0
sec	2001_01	dssp	1g2c:B	92.5	89	100	0	0	100	78	62.3	55	100	100	0.0	0.65	0.69	0.63	0.83	1.0	0.83	100.0	7.0	0.00
sec	2001_01	dssp	1g4u:S	81.7	79	91	76	88	86	70	83.5	88	90	75	0.0	0.49	0.49	0.50	0.74	0.79	0.63	100.0	6.0	2.0
sec	2001_01	dssp	1g6o:A	86.7	92	91	86	81	80	85	86.3	83	95	85	0.0	0.59	0.60	0.60	0.87	0.79	0.71	100.0	0.00	1.0
sec	2001_01	dssp	1g73:C	78.7	76	85	77	58	80	79	63.5	47	88	83	2.2	0.37	0.38	0.36	0.67	0.63	0.61	100.0	4.0	3.0
sec	2001_01	dssp	1hx2:A	61.7	0	0	16	28	72	83	33.0	100	16	35	5.0	0.01	0.01	0.01	1.0	0.07	0.12	100.0	18.0	8.0

sec	2001_01	dssp	THIS_month:psum	74.1	72	80	45	48	76	67	66.5	78.1	76.1	65.2	3.2	0.37	0.39	0.36	0.7	0.68	0.49	94.4	10.5	6.1

sec	2001_01	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_01	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_01	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2001_01
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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